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Table 1. Confirmed HCV Genotypes/Subtypes (Simmonds P, et al., 2005)


Extract complete or
from euHCVdb references entries

Genotype* Locus/Isolate(s)** Accession number(s) Reference(s)

Genotype 1
   1a HPCPLYPRE,
HPCCGAA,
H77+
M62321,
M67463,
AF009606 +
Choo QL, et al.(1991) ,
Inchauspe G, et al.(1991) ,
Kolykhalov A.A., et al.(1997) +
   1b HPCJCG,
HPCHUMR
D90208,
M58335
Kato N, et al.(1990) ,
Takamizawa A, et al.(1991)
   1c HPCCGS,
AY051292
D14853,
AY051292
Okamoto H, et al.(1994) ,
unpublished
Genotype 2
   2a HPCPOLP,
JFH-1
D00944,
AB047639
Okamoto H, et al.(1991) ,
Kato N, et al.(2001)
   2b HPCJ8G,
JPUT971017
D10988,
AB030907
Okamoto H, et al.(1992) ,
Murakami K, et al.(2001)
   2c BEBE1 D50409 Nakao H, et al.(1996)
   2k VAT96 AB031663 Samokhvalov EI, et al.(2000)
Genotype 3
   3a HPCEGS,
HPCK3A
D17763,
D28917
Sakamoto M, et al.(1994) ,
Yamada N, et al.(1994)
   3b HPCFG D49374 Chayama K, et al.(1994)
   3k HPCJK049E1 D63821 Tokita H, et al.(1996)
Genotype 4
   4a HCV4APOLY Y11604 Chamberlain RW, et al.(1997)
Genotype 5
   5a EUH1480,
SA13***
Y13184,
AF064490
Chamberlain RW, et al.(1997) ,
Bukh J, et al.(1998)
Genotype 6
   6a HCV12083,
6a33
Y12083,
AY859526 ++
Adams NJ, et al.(1997) ,
unpublished
   6b Th580 D84262 Tokita H, et al.(1998)
   6d VN235 D84263 Tokita H, et al.(1998)
   6g HPCJK046E2 D63822 Tokita H, et al.(1996)
   6h VN004 D84265 Tokita H, et al.(1998)
   6k VN405 D84264 Tokita H, et al.(1998)
Genotype 7
   7a QC69 EF108306 Not yet published

*Consensus proposed genotype/subtype names. For instances in which multiple sequences of a HCV genotype are available, two sequences have been listed, prioritized by (1) publication date, or (2) submission date when unpublished.
**Locus (or isolate name, if locus is the same as the accession number).
***Sequence obtained from acute phase plasma of a chimpanzee experimentally infected with (human-derived) isolate SA13.
  +  Reference sequence used for the consistent numbering system (manuscript in preparation)
  ++  Corrected accession number